The University of Edinburgh Art Collection “supports the world-leading research and teaching that happens within the University. Comprised of an astonishing range of objects and ideas spanning two millennia and a multitude of artistic forms, the collection reflects not only the long and rich trajectory of the University, but also major national and international shifts in art history.”1 Source: https://collections.ed.ac.uk/art/about.
See the sidebar here and note that there are 2970 pieces in the art collection we’re collecting data on.
In this workshop we’ll scrape data on all art pieces in the Edinburgh College of Art collection.
Before getting started, let’s check that a bot has permissions to access pages on this domain.
library(robotstxt)
paths_allowed("https://collections.ed.ac.uk/art)")
##
collections.ed.ac.uk
## [1] TRUE
Complete the following steps before you join the live workshop!
You have three tasks you should complete before the workshop:
Task 2: Download and install the SelectorGadget for your browser. Once you do, you should now be able to access SelectorGadget by clicking on the icon next to the search bar in your Chrome or Firefox browser.
Complete the following steps during the live workshop with your team.
As usual, start out by cloning your lab repo, named lab-04-uoe-art-YOUR_TEAMNAME
. Each team member should clone the repo and you should take turns working on various parts of the lab. Note that each team member should make commits to the repository to be eligible for points for this assignment. And remember that when each team member takes over, their first action should be to pull from repo before adding more content.
Today we will be using both R scripts and R Markdown documents:
.R
: R scripts are plain text files containing only code and brief comments,
.Rmd
: R Markdown documents are plain text files containing.
Here is the organization of your repo, and the corresponding section in the lab that each file will be used for:
|-data
| |- README.md
|-lab-06-uoe-art.Rmd # analysis
|-lab-06-uoe-art.Rproj
|-README.md
|-scripts # webscraping
| |- 01-scrape-page-one.R # scraping a single page
| |- 02-scrape-page-function.R # functions
| |- 03-scrape-page-many.R # iteration
Tip: To run the code you can highlight or put your cursor next to the lines of code you want to run and hit Command+Enter.
Work in scripts/01-scrape-page-one.R
.
We will start off by scraping data on the first 10 pieces in the collection from here.
First, we define a new object called first_url
, which is the link above. Then, we read the page at this url with the read_html()
function from the rvest package. The code for this is already provided in 01-scrape-page-one.R
.
# set url
<- "https://collections.ed.ac.uk/art/search/*:*/Collection:%22edinburgh+college+of+art%7C%7C%7CEdinburgh+College+of+Art%22?offset=0"
first_url
# read html page
<- read_html(first_url) page
For the ten pieces on this page we will extract title
, artist
, and link
information, and put these three variables in a data frame.
Let’s start with titles. We make use of the SelectorGadget to identify the tags for the relevant nodes:
%>%
page html_nodes(".iteminfo") %>%
html_node("h3 a")
## {xml_nodeset (10)}
## [1] <a href="./record/112340?highlight=*:*">untitled ...
## [2] <a href="./record/112342?highlight=*:*">Untitled ...
## [3] <a href="./record/112343?highlight=*:*">Untitled ...
## [4] <a href="./record/112344?highlight=*:*">Untitled ...
## [5] <a href="./record/112354?highlight=*:*">Untitled ...
## [6] <a href="./record/112356?highlight=*:*">Untitled ...
## [7] <a href="./record/112352?highlight=*:*">Untitled ...
## [8] <a href="./record/112349?highlight=*:*">Untitled ...
## [9] <a href="./record/112351?highlight=*:*">Anatomy Test Jeckon H ...
## [10] <a href="./record/112353?highlight=*:*">Untitled ...
Then we extract the text with html_text()
:
%>%
page html_nodes(".iteminfo") %>%
html_node("h3 a") %>%
html_text()
## [1] "untitled (1984)"
## [2] "Untitled (2019)"
## [3] "Untitled (1961)"
## [4] "Untitled (2019)"
## [5] "Untitled (2019)"
## [6] "Untitled (2019)"
## [7] "Untitled (2019)"
## [8] "Untitled (2019)"
## [9] "Anatomy Test Jeckon H (2019)"
## [10] "Untitled (2019)"
And get rid of all the spurious white space in the text with str_squish()
, which reduces repeated whitespace inside a string.
Take a look at the help for str_squish()
to find out more about how it works and how it’s different from str_trim()
.
%>%
page html_nodes(".iteminfo") %>%
html_node("h3 a") %>%
html_text() %>%
str_squish()
## [1] "untitled (1984)" "Untitled (2019)"
## [3] "Untitled (1961)" "Untitled (2019)"
## [5] "Untitled (2019)" "Untitled (2019)"
## [7] "Untitled (2019)" "Untitled (2019)"
## [9] "Anatomy Test Jeckon H (2019)" "Untitled (2019)"
And finally save the resulting data as a vector of length 10:
<- page %>%
titles html_nodes(".iteminfo") %>%
html_node("h3 a") %>%
html_text() %>%
str_squish()
The same nodes that contain the text for the titles also contains information on the links to individual art piece pages for each title. We can extract this information using a new function from the rvest package, html_attr()
, which extracts attributes.
A mini HTML lesson! The following is how we define hyperlinked text in HTML:
<a href="https://www.google.com">Seach on Google</a>
And this is how the text would look like on a webpage: Seach on Google.
Here the text is Seach on Google
and the href
attribute contains the url of the website you’d go to if you click on the hyperlinked text: https://www.google.com
.
The moral of the story is: the link is stored in the href
attribute.
%>%
page html_nodes(".iteminfo") %>% # same nodes
html_node("h3 a") %>% # as before
html_attr("href") # but get href attribute instead of text
## [1] "./record/112340?highlight=*:*" "./record/112342?highlight=*:*"
## [3] "./record/112343?highlight=*:*" "./record/112344?highlight=*:*"
## [5] "./record/112354?highlight=*:*" "./record/112356?highlight=*:*"
## [7] "./record/112352?highlight=*:*" "./record/112349?highlight=*:*"
## [9] "./record/112351?highlight=*:*" "./record/112353?highlight=*:*"
These don’t really look like URLs as we know then though. They’re relative links.
See the help for str_replace()
to find out how it works. Remember that the first argument is passed in from the pipeline, so you just need to define the pattern
and replacement
arguments.
str_replace()
, fix the URLs. You’ll note something special happening in the pattern
to replace. We want to replace the .
, but we have it as \\.
. This is because the period .
is a special character and so we need to escape it first with backslashes, \\
s. Artistssecond_url
. Copy-paste code from top of the R script to scrape the new set of art pieces, and save the resulting data frame as second_ten
.✅ ⬆️ If you haven’t done so recently, commit and push your changes to GitHub with an appropriate commit message. Make sure to commit and push all changed files so that your Git pane is cleared up afterwards.
Work in scripts/02-scrape-page-function.R
.
You’ve been using R functions, now it’s time to write your own!
Let’s start simple. Here is a function that takes in an argument x
, and adds 2 to it.
<- function(x){
add_two + 2
x }
Let’s test it:
add_two(3)
## [1] 5
add_two(10)
## [1] 12
The skeleton for defining functions in R is as follows:
<- function(input){
function_name # do something with the input(s)
# return something
}
Then, a function for scraping a page should look something like:
Reminder: Function names should be short but evocative verbs.
<- function(url){
function_name # read page at url
# extract title, link, artist info for n pieces on page
# return a n x 3 tibble
}
scrape_page
.Test out your new function by running the following in the console. Does the output look right? Discuss with teammates whether you’re getting the same results as before.
scrape_page(first_url)
scrape_page(second_url)
✅ ⬆️ If you haven’t done so recently, commit and push your changes to GitHub with an appropriate commit message. Make sure to commit and push all changed files so that your Git pane is cleared up afterwards.
Work in scripts/03-scrape-page-many.R
.
We went from manually scraping individual pages to writing a function to do the same. Next, we will work on making our workflow a little more efficient by using R to iterate over all pages that contain information on the art collection.
Reminder: The collection has 2970 pieces in total.
That means we give develop a list of URLs (of pages that each have 10 art pieces), and write some code that applies the scrape_page()
function to each page, and combines the resulting data frames from each page into a single data frame with 2970 rows and 3 columns.
Click through the first few of the pages in the art collection and observe their URLs to confirm the following pattern:
[sometext]offset=0 # Pieces 1-10
[sometext]offset=10 # Pieces 11-20
[sometext]offset=20 # Pieces 21-30
[sometext]offset=30 # Pieces 31-40
...
[sometext]offset=2960 # Pieces 2961-2970
We can construct these URLs in R by pasting together two pieces: (1) a common (root
) text for the beginning of the URL, and (2) numbers starting at 0, increasing by 10, all the way up to 2970. Two new functions are helpful for accomplishing this: glue()
for pasting two pieces of text and seq()
for generating a sequence of numbers.
Finally, we’re ready to iterate over the list of URLs we constructed. We will do this by mapping the function we developed over the list of URLs. There are a series of mapping functions in R (which we’ll learn about in more detail tomorrow), and they each take the following form:
map([x], [function to apply to each element of x])
In our case x
is the list of URLs we constructed and the function to apply to each element of x
is the function we developed earlier, scrape_page
. And as a result we want a data frame, so we use map_dfr
function:
map_dfr(urls, scrape_page)
uoe_art
.data
folder so that you can use it in the analysis section.Aim to make it to this point during the workshop.
✅ ⬆️ If you haven’t done so recently, commit and push your changes to GitHub with an appropriate commit message. Make sure to commit and push all changed files so that your Git pane is cleared up afterwards.
Work in lab-04.Rmd
for the rest of the lab.
Now that we have a tidy dataset that we can analyze, let’s do that!
We’ll start with some data cleaning, to clean up the dates that appear at the end of some title text in parentheses. Some of these are years, others are more specific dates, some art pieces have no date information whatsoever, and others have some non-date information in parentheses. This should be interesting to clean up!
First thing we’ll try is to separate the title
column into two: one for the actual title
and the other for the date
if it exists. In human speak, we need to
“separate the
title
column at the first occurrence of(
and put the contents on one side of the(
into a column calledtitle
and the contents on the other side into a column calleddate
”
Luckily, there’s a function that does just this: separate()
!
And once we have completed separating the single title
column into title
and date
, we need to do further clean-up in the date
column to get rid of extraneous )
s with str_remove()
, capture year information, and save the data as a numeric variable.
Hint: Remember escaping special characters from yesterday’s lecture? You’ll need to use that trick again.
year
where it’s convenient to do so.Print out a summary of the data frame using the skim()
function. How many pieces have artist info missing? How many have year info missing?
Make a histogram of years. Use a reasonable binwidth. Do you see anything out of the ordinary?
Hint: You’ll want to use mutate()
and if_else()
or case_when()
to implement the correction.
🧶 ✅ ⬆️ If you haven’t done so recently, knit, commit, and push your changes to GitHub with an appropriate commit message. Make sure to commit and push all changed files so that your Git pane is cleared up afterwards.
Hint: str_subset()
can be helful here. Y consider how you might capture titles where the word appears as “child” and “Child”.
🧶 ✅ ⬆️ Knit, commit, and push your final changes to GitHub with an appropriate commit message. Make sure to commit and push all changed files so that your Git pane is cleared up afterwards.